Last updated on 2024-12-02 09:49:18 CET.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 2.4.1 | 9.67 | 245.61 | 255.28 | OK | |
| r-devel-linux-x86_64-debian-gcc | 2.4.1 | 6.84 | 172.74 | 179.58 | OK | |
| r-devel-linux-x86_64-fedora-clang | 2.4.1 | 415.69 | OK | |||
| r-devel-linux-x86_64-fedora-gcc | 2.4.1 | 414.03 | OK | |||
| r-devel-windows-x86_64 | 2.4.1 | 13.00 | 266.00 | 279.00 | ERROR | |
| r-patched-linux-x86_64 | 2.4.1 | 9.62 | 234.64 | 244.26 | OK | |
| r-release-linux-x86_64 | 2.4.1 | 9.22 | 233.44 | 242.66 | OK | |
| r-release-macos-arm64 | 2.4.1 | 138.00 | OK | |||
| r-release-macos-x86_64 | 2.4.1 | 12.00 | ERROR | |||
| r-release-windows-x86_64 | 2.4.1 | 14.00 | 614.00 | 628.00 | OK | |
| r-oldrel-macos-arm64 | 2.4.1 | 10.00 | ERROR | |||
| r-oldrel-macos-x86_64 | 2.4.1 | 12.00 | ERROR | |||
| r-oldrel-windows-x86_64 | 2.4.1 | 16.00 | 325.00 | 341.00 | OK |
Version: 2.4.1
Check: tests
Result: ERROR
Running 'testthat-active_snw.R' [29s]
Running 'testthat-clustering.R' [5s]
Running 'testthat-comparison.R' [3s]
Running 'testthat-core.R' [3s]
Running 'testthat-data_generation.R' [4s]
Running 'testthat-enrichment.R' [27s]
Running 'testthat-scoring.R' [3s]
Running 'testthat-utility.R' [13s]
Running 'testthat-visualization.R' [4s]
Running 'testthat-zzz.R' [3s]
Running the tests in 'tests/testthat-data_generation.R' failed.
Complete output:
> library(testthat)
> library(pathfindR)
Loading required package: pathfindR.data
##############################################################################
Welcome to pathfindR!
Please cite the article below if you use pathfindR in published reseach:
Ulgen E, Ozisik O, Sezerman OU. 2019. pathfindR: An R Package for Comprehensive
Identification of Enriched Pathways in Omics Data Through Active Subnetworks.
Front. Genet. doi:10.3389/fgene.2019.00858
##############################################################################
>
> test_check("pathfindR", filter = "data_generation")
[ FAIL 1 | WARN 0 | SKIP 2 | PASS 19 ]
══ Skipped tests (2) ═══════════════════════════════════════════════════════════
• On CRAN (2): 'test-data_generation.R:94:3', 'test-data_generation.R:121:3'
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-data_generation.R:49:3'): `get_biogrid_pin()` -- determines and downloads the latest version ──
Error in `if (is.na(a)) return(-1L)`: argument is of length zero
Backtrace:
▆
1. └─pathfindR:::get_biogrid_pin() at test-data_generation.R:49:3
2. ├─base::ifelse(...)
3. └─utils::compareVersion(release, "3.5.183")
[ FAIL 1 | WARN 0 | SKIP 2 | PASS 19 ]
Error: Test failures
Execution halted
Flavor: r-devel-windows-x86_64
Version: 2.4.1
Check: package dependencies
Result: ERROR
Package required but not available: ‘ggkegg’
See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Flavors: r-release-macos-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64